#---example2.t---
outputfolder ./bur_example2/ 
reference ./testdata/tair10_um.fa
iterations 5
threads 6
maxreads 4000000

#Group 1
grouppara_1 ID:bur0LA,LB:bur0_LIB1,PL:Illumina,SM:bur0
prepara_1 -q sanger 
mappara_1 --substitutionrate=0.001
loaddata_1 ./testdata/s_1_1_sequence.txt.gz ./testdata/s_1_2_sequence.txt.gz

#Group 2
grouppara_2 ID:bur0LB,LB:bur0_LIB2,PL:Illumina,SM:bur0
prepara_2 -q sanger 
loaddata_2 ./testdata/sra_data.fastq.gz 


#only used by MCMERGE, can be download from the web sites
profilebam /data/sim/sim_tair10.bam
## ---end--